RetrogeneDB ID: | retro_pcap_57 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3149:112127..112897(+) | ||
Located in intron of: | ENSPCAG00000015746 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPCAG00000015040 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 85.38 % |
Parental protein coverage: | 97.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GKNKRLTK-GGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLA |
GK.K.LTK..GKKG.KK.VVDPFSK.D..DVKAP.M.NIRN.GKT.VTRTQGTKIASDGLKG.VFEVSLA | |
Retrocopy | GKDKCLTK<AGKKGVKKRVVDPFSKQDRNDVKAPPMCNIRNTGKTQVTRTQGTKIASDGLKGHVFEVSLA |
Parental | DLQNDEVAFRKFKLITE-DVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVG |
DLQN.EVAFRKFKLITE.DVQGKNCL.NFHGMDLTRDKMCSMVKK.QTM..AH.DVK.TDGYLL..FC.G | |
Retrocopy | DLQNSEVAFRKFKLITE<DVQGKNCLINFHGMDLTRDKMCSMVKKQQTMTDAHADVKATDGYLLCPFCFG |
Parental | FTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVF |
FT.KRNNQI.K.SYAQHQQV.Q..KK.MEIMTREVQTNDLKEVVNKLIPDSI.KDIEKACQSIYPLH.VF | |
Retrocopy | FTEKRNNQIQKMSYAQHQQVHQVQKKRMEIMTREVQTNDLKEVVNKLIPDSIVKDIEKACQSIYPLHGVF |
Parental | VR-KVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPV |
VR.KV.MLKKPKFEL.KLMELHGEGSSSGKATGDETGAKVERADGYEP.V | |
Retrocopy | VR>KVEMLKKPKFELRKLMELHGEGSSSGKATGDETGAKVERADGYEPAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |