Parental gene:

RPS3A, ENSPPYG00000025869

Aliases:None
Description:40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750]
Organism:Orangutan (Pongo abelii)
Coordinates:4:156793001..156798474(+)


>ENSPPYG00000025869
ATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCACCCGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAG
GAACCAAAATTGCATCTGATGGTCTCAAGGGTCGTGTGTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCA
TTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGTAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCG
TGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACAATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTATT
TGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAG
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACCAATGACTTGAAAGAAGTGGTCAATAA
ATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTCGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAA
GCCACTGGGGATGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 71 .93 RPM
SRP007412_cerebellum 99 .96 RPM
SRP007412_heart 95 .16 RPM
SRP007412_kidney 145 .71 RPM
SRP007412_liver 124 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000015569 ortholog_one2one 9 retrogenes
retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Equus caballus ENSECAG00000009573 ortholog_one2one 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Felis catus ENSFCAG00000031288 ortholog_one2one 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Loxodonta africana ENSLAFG00000017660 possible_ortholog 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 ortholog_one2one 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Procavia capensis ENSPCAG00000015040 ortholog_one2one 6 retrogenes
retro_pcap_211, retro_pcap_286, retro_pcap_355, retro_pcap_420, retro_pcap_456, retro_pcap_57,
Pteropus vampyrus ENSPVAG00000015406 ortholog_one2one 24 retrogenes
retro_pvam_1053, retro_pvam_1056, retro_pvam_1058, retro_pvam_1138, retro_pvam_1180, retro_pvam_1203, retro_pvam_1476, retro_pvam_149, retro_pvam_311, retro_pvam_330, retro_pvam_354, retro_pvam_36, retro_pvam_368, retro_pvam_376, retro_pvam_462, retro_pvam_486, retro_pvam_582, retro_pvam_73, retro_pvam_754, retro_pvam_799, retro_pvam_86, retro_pvam_893, retro_pvam_917, retro_pvam_996,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_one2one 1 retrogene
retro_itri_58,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_369 84.88 97.35
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2. retro_pabe_394 69.09 60.98
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3. retro_pabe_473 81.43 52.65
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4. retro_pabe_550 90.19 100.00
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5. retro_pabe_602 77.32 73.11
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6. retro_pabe_789 65.00 59.85
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7. retro_pabe_912 84.79 81.82
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8. retro_pabe_985 85.80 63.64
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9. retro_pabe_1339 83.01 77.27
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10. retro_pabe_1572 94.64 63.64
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11. retro_pabe_1636 77.35 87.88
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12. retro_pabe_1895 88.13 82.20
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13. retro_pabe_1899 80.82 92.05
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14. retro_pabe_2117 80.18 81.82
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15. retro_pabe_2570 85.31 92.05
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16. retro_pabe_2578 96.97 100.00
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17. retro_pabe_2661 78.11 63.64
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18. retro_pabe_2769 93.79 54.92
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19. retro_pabe_2779 50.52 70.83
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20. retro_pabe_2826 95.45 100.00
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21. retro_pabe_2942 95.11 100.00
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22. retro_pabe_3014 56.91 65.91
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23. retro_pabe_3076 92.08 100.00
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24. retro_pabe_3186 76.11 92.42
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25. retro_pabe_3214 92.11 85.23
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26. retro_pabe_3560 79.61 77.27
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27. retro_pabe_3692 94.70 100.00
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Download FASTA sequences of all ENSPPYG00000025869 retrocopies