RetrogeneDB ID: | retro_pvam_1053 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_2497:166606..167254(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 86.64 % |
Parental protein coverage: | 82.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFH |
DVKAPA.FNIRNIGKTLV.RTQGTKI.SDGLKG.VFEVSLAD.QNDE.A.RKFK.ITEDVQGKNCL.NFH | |
Retrocopy | DVKAPAIFNIRNIGKTLVMRTQGTKITSDGLKGHVFEVSLADQQNDEIAVRKFKRITEDVQGKNCLANFH |
Parental | GMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEI |
GM.LTRDKMCSMVK.WQT.IEAHV.VKTT.GY.LRLFCVGFTKKRNNQ..KTSY.QHQQV..IR.KMMEI | |
Retrocopy | GMNLTRDKMCSMVKNWQTVIEAHVEVKTTNGYSLRLFCVGFTKKRNNQTLKTSYVQHQQVHPIR-KMMEI |
Parental | MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKA |
MT.EVQTNDLKEVVNKLI.DS.GKDIEKACQS.YPLHDVFVRK.KMLKKP.FELGKLMEL.GEGSSSGKA | |
Retrocopy | MT*EVQTNDLKEVVNKLILDSTGKDIEKACQSVYPLHDVFVRKIKMLKKPRFELGKLMELRGEGSSSGKA |
Parental | TGDETGA |
TGD.TGA | |
Retrocopy | TGDVTGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |