RetrogeneDB ID: | retro_pabe_789 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:88391824..88392298(-) | ||
Located in intron of: | ENSPPYG00000003766 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 65. % |
Parental protein coverage: | 59.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
..V.KNK..TKGGKKG..KKVV..FSK..WY.VKA.AMFNIRNI.K.LV..T.GT...SDG.KG...EVS | |
Retrocopy | VTVSKNKCHTKGGKKGTEKKVVASFSKIYWYNVKASAMFNIRNIEKALVIGTHGTDFVSDGFKGGLIEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCL-TNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
L.D.QNDE.AFRKFK..T..V.GKNCL..NFH.M.L..DKMC.MVKKWQ..IEAHV.VKT.DGYLL.LFC | |
Retrocopy | LGDVQNDEIAFRKFKPFTKNVHGKNCL<ENFHDMNLAHDKMCFMVKKWQIIIEAHVAVKTIDGYLLCLFC |
Parental | VGFTKKR-NNQIRKTSYAQH |
V.FTK...N.QI..T....H | |
Retrocopy | VSFTKNM>NGQIPETEDLLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .03 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .00 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_914 |