RetrogeneDB ID: | retro_ecab_168 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:66679780..66680181(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.01 % |
Parental protein coverage: | 53.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG |
VD.KTT.GYL.RL.CVGFTKK.NNQI..TSYAQHQQ..QI.KKMME.MT.EVQT.DLKEVV.KLIPDSIG | |
Retrocopy | VDIKTTNGYLPRLLCVGFTKKHNNQIQ*TSYAQHQQACQIWKKMMEVMTQEVQTDDLKEVVSKLIPDSIG |
Parental | K-DIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQES |
K.D.EKACQSIYPLHDV.V.KVKMLKKPKFELGK.ME.HGEG...GKATGDETGAK....D...PP.QES | |
Retrocopy | K<DTEKACQSIYPLHDVLVGKVKMLKKPKFELGKVMEFHGEG--CGKATGDETGAK----DECKPPAQES |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 1423 .09 RPM |
SRP021940_cerebellum | 0 .00 RPM | 181 .19 RPM |
SRP021940_embryo | 0 .10 RPM | 677 .98 RPM |
SRP021940_placental_villous | 0 .05 RPM | 542 .50 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 598 .48 RPM |
SRP021940_testis | 0 .00 RPM | 148 .22 RPM |