RetrogeneDB ID: | retro_pcap_420 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_79542:9398..9841(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPCAG00000015040 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 69.8 % |
Parental protein coverage: | 55.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK |
Q.M.EA.VDVK..DGYLL.L.CVGF.K..N.QI.KTS.AQ.Q...Q.R.KMMEIM..E.QTND..EVVNK | |
Retrocopy | QKMTEARVDVKIVDGYLLCLSCVGFNKRHNDQIQKTSDAQQQHSHQTRGKMMEIMAWEMQTNDPEEVVNK |
Parental | LIPDSIGKDIEKA-CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG-SSSGKATGDETGAKVERADG |
LIPDS..KDI.KA.CQSIYPL..VFVRKVK.L.K.KF.LG.L.ELHGEG.S.SGKATG..TGAKVE..D. | |
Retrocopy | LIPDSTRKDIAKA>CQSIYPLYEVFVRKVKVLNKSKFVLGNLVELHGEG>SNSGKATGAATGAKVE*PDS |
Parental | YEPPVQESV |
YEPPV.ES. | |
Retrocopy | YEPPV*ESL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |