RetrogeneDB ID: | retro_cpor_1154 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_50:4211173..4211721(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.19 % |
Parental protein coverage: | 70.08 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGK-TLVTRTQGTKIASDGLKGRVFEV |
.AVGKNK..TKG.KK.AKKKVV.PFS.KDWYDVKAPA.FN.RNIGK.T..TRTQG....SDG.KG..FEV | |
Retrocopy | LAVGKNKHFTKGSKKEAKKKVVGPFS*KDWYDVKAPAIFNVRNIGK<TIDTRTQGSLVVSDGRKGQLFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SLADLQNDEVAFRKFKLI.EDVQGK.CL.N.HGMDL..DKMCS..KKWQTMI.AHV.VKT...YLL.LF. | |
Retrocopy | SLADLQNDEVAFRKFKLIAEDVQGKSCLPNLHGMDLNHDKMCSTFKKWQTMIKAHVNVKTIKDYLLHLF* |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVV |
VGF.KK.NN...K.SYAQH.QV.QI...MM.IMTRE..TNDLKEVV | |
Retrocopy | VGFPKKHNN*MQKISYAQH*QVCQI--*MMQIMTRELPTNDLKEVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .73 RPM |
SRP017611_liver | 0 .00 RPM | 127 .66 RPM |
SRP040447_lung | 0 .00 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 268 .71 RPM |