RetrogeneDB ID: | retro_cpor_609 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:46123089..46123589(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.53 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQI-R |
L.NFHGM.LT.DKMCSM.KKWQTMI.AHV.VKTTDG.LL.LFCVG.TKK.NNQI..TSY.QHQQV.Q... | |
Retrocopy | LNNFHGMGLTCDKMCSMIKKWQTMIKAHVNVKTTDGCLLSLFCVGYTKKCNNQIQRTSYVQHQQVLQVWK |
Parental | KKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVR-KVKMLKKPKFELGKLMELHGE |
KK.MEIMT.EV.TND.KEVV.KL.PDS.GKD........Y.LHDVFV..KVKMLKKPKFELGK..ELHGE | |
Retrocopy | KKKMEIMT*EV*TNDFKEVVSKLSPDSTGKD--RKVVPVYSLHDVFVK<KVKMLKKPKFELGKPTELHGE |
Parental | GSSSGKATGDETGAKVERADGYEPPVQESV |
.SSSGKAT.DETGAKVE.AD.YEPP.Q... | |
Retrocopy | DSSSGKATRDETGAKVE*ADRYEPPGQANL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .10 RPM | 192 .73 RPM |
SRP017611_liver | 0 .00 RPM | 127 .66 RPM |
SRP040447_lung | 0 .05 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 268 .71 RPM |