RetrogeneDB ID: | retro_pvam_754 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_10705:25922..26588(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 59.21 % |
Parental protein coverage: | 84.85 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | IRNIG-KTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLIT-EDVQGKNCLTNFHGMDLTRD |
IRNIG....VT..Q.T.IA.DGL.G.....SLA.LQN...AF.KFKLI..EDVQ.KN.LTNFHG.DLT.D | |
Retrocopy | IRNIG>EKIVTWIQATRIAFDGLEGHIS*MSLAALQNNGFAFTKFKLIM<EDVQNKNFLTNFHGVDLTCD |
Parental | KMCSMVKKWQTMIEAHVDVKTT-DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQ |
KM...VKK.QT.IE...DVK...DGYLL...C.......N.QI....Y.Q.QQ..QI.K.M.EI.T.EV. | |
Retrocopy | KMYALVKK*QTLIETDIDVKSR<DGYLLT--CSMLI*VKNAQIIQKIYFQYQQIHQIWKEMIEITTEEVL |
Parental | TNDLKEVVNKLIPDSIGKDIEKACQSIYP-LHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDET |
T..LKEVVNK.IPDSI.K.IEK.CQSIY....D....K.K.LKK.K..LGKL..LHGEG.S.GKAT..ET | |
Retrocopy | TYNLKEVVNKYIPDSIRKNIEKICQSIYL>FSDMLI*KIKLLKKTKYALGKLLMLHGEGNSCGKATKGET |
Parental | GAKVERADGYEPPVQESV |
.AK.ER.DG..PPVQ.SV | |
Retrocopy | EAKAERVDGF*PPVQKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |