RetrogeneDB ID: | retro_cpor_210 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:2546034..2546618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.06 % |
Parental protein coverage: | 73.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
S.ADLQN.E..FR.F.LI.ED.QGKNCL.NFHGMDLT.DKMCSMVK.WQTMIEAHVD.KTTDGYLL.LFC | |
Retrocopy | SHADLQNAEFTFRRFNLIPEDFQGKNCLPNFHGMDLTSDKMCSMVKQWQTMIEAHVDLKTTDGYLLHLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV-VNKLIPDSIGKDIEKACQSIYPLH |
.GF.KK.N.Q..KTSYAQHQQV.QI.K.MMEIMT...QTNDLKEV.VNKLI.DS.GKD.EKA.QSIYP.H | |
Retrocopy | IGFIKKCNKQLQKTSYAQHQQVLQIWKRMMEIMTQQLQTNDLKEV<VNKLILDSFGKDTEKAWQSIYPPH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
.VF.RKV.MLKKPK.ELGKL.ELH.EGSSSGKAT..E.GA.VE.ADGYEPPVQ.SV | |
Retrocopy | GVFIRKVNMLKKPKVELGKLLELHSEGSSSGKATRNEPGAEVE*ADGYEPPVQDSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .73 RPM |
SRP017611_liver | 0 .00 RPM | 127 .66 RPM |
SRP040447_lung | 0 .00 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 268 .71 RPM |