Parental gene:

RPS3A, ENSPVAG00000015406

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_3949:20804..24932(+)


>ENSPVAG00000015406
ATGGCGGTCGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAAGGAGCTAAGAAGAAAGTGGTTGACCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAATATACGAAATATTGGAAAAACACTAGTCACAAGAACTCAAG
GAACCAAAATCGCATCTGATGGTCTCAAGGGTCGTGTTTTTGAAGTGAGCCTAGCTGATCTGCAGAATGATGAAGTTGCA
TTTAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGCCTGACTAATTTTCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCAATGGTCAAAAAATGGCAGACCATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTATT
TGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACTTCTTATGCTCAGCATCAACAG
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA
ATTGATTCCAGATAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCAATTTATCCTCTACATGATGTCTTTGTTAGAA
AAGTCAAAATGCTGAAGAAGCCTAAGTTTGAGTTGGGAAAACTCATGGAGCTCCATGGTGAAGGTAGCAGTTCTGGAAAA
GCTACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATACGAGCCCCCAGTCCAAGAATCTGTTTAA

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000015569 ortholog_one2one 9 retrogenes
retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Equus caballus ENSECAG00000009573 ortholog_one2one 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Felis catus ENSFCAG00000031288 ortholog_one2one 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Loxodonta africana ENSLAFG00000017660 possible_ortholog 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 ortholog_one2one 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Procavia capensis ENSPCAG00000015040 ortholog_one2one 6 retrogenes
retro_pcap_211, retro_pcap_286, retro_pcap_355, retro_pcap_420, retro_pcap_456, retro_pcap_57,
Pongo abelii ENSPPYG00000025869 ortholog_one2one 27 retrogenes
retro_pabe_1339, retro_pabe_1572, retro_pabe_1636, retro_pabe_1895, retro_pabe_1899, retro_pabe_2117, retro_pabe_2570, retro_pabe_2578, retro_pabe_2661, retro_pabe_2769, retro_pabe_2779, retro_pabe_2826, retro_pabe_2942, retro_pabe_3014, retro_pabe_3076, retro_pabe_3186, retro_pabe_3214, retro_pabe_3560, retro_pabe_369, retro_pabe_3692, retro_pabe_394, retro_pabe_473, retro_pabe_550, retro_pabe_602, retro_pabe_789, retro_pabe_912, retro_pabe_985,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_one2one 1 retrogene
retro_itri_58,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_36 82.64 54.17
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2. retro_pvam_73 58.55 56.82
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3. retro_pvam_86 58.87 51.52
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4. retro_pvam_149 85.02 92.80
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5. retro_pvam_311 61.44 88.26
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6. retro_pvam_330 73.79 54.17
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7. retro_pvam_354 79.14 52.27
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8. retro_pvam_368 66.42 51.14
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9. retro_pvam_376 63.92 57.58
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10. retro_pvam_462 68.99 58.33
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11. retro_pvam_486 73.65 54.17
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12. retro_pvam_582 73.24 53.41
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13. retro_pvam_754 59.21 84.85
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14. retro_pvam_799 82.12 67.05
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15. retro_pvam_893 75.09 100.00
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16. retro_pvam_917 74.81 100.00
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17. retro_pvam_996 80.75 100.00
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18. retro_pvam_1053 86.64 82.20
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19. retro_pvam_1056 78.80 81.44
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20. retro_pvam_1058 82.74 63.64
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21. retro_pvam_1138 71.74 68.94
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22. retro_pvam_1180 71.63 51.89
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23. retro_pvam_1203 58.70 51.52
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24. retro_pvam_1476 82.68 85.98
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Download FASTA sequences of all ENSPVAG00000015406 retrocopies