RetrogeneDB ID: | retro_pvam_799 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_118:81377..81902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 82.12 % |
Parental protein coverage: | 67.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VGKNKRLTKGGKKGAKKK-VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSL |
VGKNK.LT.G.KK.A.KK.VVDPFSKK.WYDVK.PAMFNIRNIGKTLVTRTQGT.I.SDGLK.RVF.VSL | |
Retrocopy | VGKNKLLTNGSKKRA-KK<VVDPFSKKHWYDVKTPAMFNIRNIGKTLVTRTQGTQITSDGLKSRVFAVSL |
Parental | ADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVG |
ADL.NDEVAFRKFKLITEDVQGKNCL.NFHG.DLT.DKMCS..KKWQTMI.AHVDVKT..GYLL..F.V. | |
Retrocopy | ADL*NDEVAFRKFKLITEDVQGKNCLSNFHGVDLTHDKMCSIFKKWQTMIKAHVDVKTIHGYLLHMFSVA |
Parental | FTKKRNNQIRKTSYAQHQQV-RQIRKKMMEIMTREVQTN |
FTKK.NNQI.KTSYAQHQQV..QI..KMMEIMT.EVQTN | |
Retrocopy | FTKKCNNQIWKTSYAQHQQV>HQI-QKMMEIMTQEVQTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |