RetrogeneDB ID: | retro_cpor_1229 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_59:6470985..6471614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.27 % |
Parental protein coverage: | 81.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | GKNKRLTKGGKKGAKKKVVD-PFSKK-DWYDVKAPAMFNIRNIGK-TLVTRTQGTKIASDGLKGRVFEVS |
G.N..L.KG.KKGA.KK.VD..FS.K..WYDV.APAMFN.R..GK.T..TRT.GT..AS.G.KG...EV. | |
Retrocopy | GWNRYLMKGVKKGARKKMVD<SFSQK<NWYDVTAPAMFNTRHFGK>TFITRTRGTQTASIGFKGHTCEVH |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGM-DLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
LA.LQ.D..A.RKF.LITE..QG..CL..F..M..LTRD..C.MVKKWQ..IEA.VDV...DGYLL.L.C | |
Retrocopy | LANLQDDDIALRKFRLITEYMQGISCLPRFRSM<GLTRDEVCPMVKKWQAVIEAQVDVMSIDGYLLPLCC |
Parental | VGFTKK-RNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
V.FT.....NQI.KTS.AQH.....IRKKMME....E.QTN.LKEV.NKLI.DSIGK....AC.SIY... | |
Retrocopy | VAFTNQ>HSNQIQKTS-AQH*WACLIRKKMMEMLAHEGQTNELKEVLNKLILDSIGKE---ACLSIYLFP |
Parental | DVFVRKVKM |
DVF..KVK. | |
Retrocopy | DVFIGKVKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .73 RPM |
SRP017611_liver | 0 .00 RPM | 127 .66 RPM |
SRP040447_lung | 0 .00 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 268 .71 RPM |