RetrogeneDB ID: | retro_pabe_2570 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:158297870..158298594(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 85.31 % |
Parental protein coverage: | 92.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDV |
VD.FSKKDWYDVKAPAMFNIRNIGKTLVTRT.GTKIASDGLKGRVFE.SLADLQN.EVAFRKFKLIT..V | |
Retrocopy | VDLFSKKDWYDVKAPAMFNIRNIGKTLVTRTEGTKIASDGLKGRVFEMSLADLQNYEVAFRKFKLITKGV |
Parental | Q-GKNCLTNFHGMDLTRDKMCSMVKKWQT-MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ |
..GK..L.NFHGMDLT...MCSMVKKWQT.MIEAHVDVKTTDGYLL.LFC..FTKK.NNQI.KTSYAQH. | |
Retrocopy | R<GKK-LPNFHGMDLTCGRMCSMVKKWQT<MIEAHVDVKTTDGYLLCLFCTVFTKKCNNQIWKTSYAQHK |
Parental | QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLM |
QV.QI.KKMMEIMT.EVQ.NDLKEVV.KLIPDSIGKDI.KA.QSIY.L.DVF.RKVKMLKK.KFELG.LM | |
Retrocopy | QVCQIWKKMMEIMTQEVQRNDLKEVVSKLIPDSIGKDIDKAYQSIYSLNDVFIRKVKMLKKTKFELGNLM |
Parental | ELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
ELHGEGSSSGKATG.ETG.KVE.ADGYEPPVQESV | |
Retrocopy | ELHGEGSSSGKATGEETGSKVE*ADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .03 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3112 |