RetrogeneDB ID: | retro_ecab_256 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 11:43112677..43113208(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.13 % |
Parental protein coverage: | 67.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAVGKNKRLTKGGKKGAKKK-VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK-GRVFE |
M.V.KNK.L..GGKK.A.KK.VVDP.S.....D.KA.AMF..RNIGKTLVTRTQ..KIASDGL..G.VFE | |
Retrocopy | MVVSKNKHLMNGGKKVARKK<VVDP-SGEIGFDMKALAMFKVRNIGKTLVTRTQEIKIASDGLR<GHVFE |
Parental | VSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLF |
VS.AD.QNDE.AFRKFKLITE.VQGKN.LTN..G..L..D.MCS.VK...TMIEAHVDVKT.D..LL.LF | |
Retrocopy | VSFADVQNDEFAFRKFKLITEGVQGKNYLTNLYGWILPFDIMCSRVKTRETMIEAHVDVKTNDDHLLHLF |
Parental | CVGFT-KKRNNQIRKT-SYAQHQQVRQIRKKMMEIMTREVQT |
C...T.KK.NNQI.KT.SY.Q..QV.QIRKKM.EIMT.E..T | |
Retrocopy | CISVT>KKLNNQIQKT>SYTQYKQVHQIRKKMVEIMTPEM*T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 1423 .09 RPM |
SRP021940_cerebellum | 0 .05 RPM | 181 .19 RPM |
SRP021940_embryo | 0 .10 RPM | 677 .98 RPM |
SRP021940_placental_villous | 0 .10 RPM | 542 .50 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 598 .48 RPM |
SRP021940_testis | 0 .06 RPM | 148 .22 RPM |