RetrogeneDB ID: | retro_ecab_222 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:62544922..62545601(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.12 % |
Parental protein coverage: | 87.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | APAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMD |
AP.MFNIRNI.KTLVTRTQGTKIASDGLKGRVFE..LADLQNDEVAFRKFKLITED.QGKNCLTNF.GM. | |
Retrocopy | APTMFNIRNIRKTLVTRTQGTKIASDGLKGRVFEMNLADLQNDEVAFRKFKLITEDAQGKNCLTNFQGMG |
Parental | LTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTS-YAQHQQVRQIRKKMMEIMT |
LTRDKMCS.VKK.QT..EAHVDVKTT.GYLL.LFC.GFTKK.NNQI.KTS..AQHQQV.QI..KMMEIMT | |
Retrocopy | LTRDKMCSKVKK*QTVSEAHVDVKTTNGYLLCLFCAGFTKKCNNQIQKTS>NAQHQQVCQIQQKMMEIMT |
Parental | REVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATG |
.E.QTNDLKEVVNKLIPD.IGKDIEKACQ.IY.L.D.FVRKVK.LKK..FELGKLMELHGEG.SSGKATG | |
Retrocopy | QEIQTNDLKEVVNKLIPDGIGKDIEKACQPIYLLRDGFVRKVKVLKKLQFELGKLMELHGEGCSSGKATG |
Parental | DETGAKVERADGYEPPVQESV |
....AK.E.ADGYEP.VQESV | |
Retrocopy | ----AKAE*ADGYEPSVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .59 RPM | 1423 .09 RPM |
SRP021940_cerebellum | 0 .16 RPM | 181 .19 RPM |
SRP021940_embryo | 0 .72 RPM | 677 .98 RPM |
SRP021940_placental_villous | 0 .43 RPM | 542 .50 RPM |
SRP021940_synovial_membrane | 0 .36 RPM | 598 .48 RPM |
SRP021940_testis | 0 .06 RPM | 148 .22 RPM |