RetrogeneDB ID: | retro_pabe_3076 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:81386935..81387726(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000017806 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 92.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNK...KG.KKGA.KKVVD.FSKKDWYDVKAPAMFNIRN.GK.L.TRTQGTKIASDGLKG.VF.VS | |
Retrocopy | MAVGKNKCFMKGSKKGARKKVVDQFSKKDWYDVKAPAMFNIRNTGKMLITRTQGTKIASDGLKGHVFKVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM-IEAHVDVKTTDGYLLRLFC |
LADLQNDEVAFRKFKLITEDV.GKNCLTNFHGMDLT.DKMCSMVKKWQT..IEAHVDVKTTDGYLLRLFC | |
Retrocopy | LADLQNDEVAFRKFKLITEDVRGKNCLTNFHGMDLTHDKMCSMVKKWQTR<IEAHVDVKTTDGYLLRLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD |
VGFTKKRNNQIRKTSYAQHQQV.QIRKKMMEIMTREVQTNDLKEVVNKL.PDSIGKDIEKACQSIYPLHD | |
Retrocopy | VGFTKKRNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLVPDSIGKDIEKACQSIYPLHD |
Parental | VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
VFVRKVKMLKKPKF.LGKLMELHGE.SSSGK.TGDETGAKVERA.GYEPPVQESV | |
Retrocopy | VFVRKVKMLKKPKFQLGKLMELHGESSSSGKTTGDETGAKVERAEGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .03 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .00 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3876 |