RetrogeneDB ID: | retro_pvam_73 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1236:194214..194652(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 58.55 % |
Parental protein coverage: | 56.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK-TSYAQHQQVRQIRKKMMEIMTREVQTNDLKE |
KK.QTMIEAH...K.TD.YLL..FC.GFTKK.N....K....AQH....QI.KK..E....EVQ.N..KE | |
Retrocopy | KK*QTMIEAHGAGKITDSYLLHPFCTGFTKKTNIRVQK<RPRAQHRYICQIQKKVVEVTAQEVQANVSKE |
Parental | VVNKLIPDSIGKDIEK-ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER |
.VN..I.D.IGKD..K.A.QSIY...DVFVRK.KM.KKPK..LGKLMEL.GEGS.SG.A.....G..... | |
Retrocopy | GVNESIVDGIGKDTKK>ARQSIYLPQDVFVRKIKMPKKPKSDLGKLMELPGEGSTSGRAA----GGETG* |
Parental | ADGYEPPVQESV |
ADG.EPPVQ.SV | |
Retrocopy | ADGSEPPVQDSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |