RetrogeneDB ID: | retro_cpor_383 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_14:14664869..14665652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCPOG00000015569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
M.VGKNK.L....KKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKG.VFEVS | |
Retrocopy | MVVGKNKCLM---KKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLI.EDV.GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLF.V | |
Retrocopy | LADLQNDEVAFRKFKLIAEDV*GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFYV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKKRNNQIRKTSYAQHQQV.QI.KKMMEIMTREVQTNDLKEV..KLIPDSIGKDI.KACQSIYPLHDV | |
Retrocopy | GFTKKRNNQIRKTSYAQHQQVCQIGKKMMEIMTREVQTNDLKEVASKLIPDSIGKDIGKACQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKM.KKPKFELGKLMELHGEGSSSGKATGDE.GAKVERADGYEPPVQESV | |
Retrocopy | FVRKVKMMKKPKFELGKLMELHGEGSSSGKATGDEPGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .52 RPM | 98 .41 RPM |
SRP017611_kidney | 0 .21 RPM | 192 .73 RPM |
SRP017611_liver | 0 .13 RPM | 127 .66 RPM |
SRP040447_lung | 0 .30 RPM | 307 .85 RPM |
SRP040447_skeletal_muscle | 0 .14 RPM | 268 .71 RPM |