RetrogeneDB ID: | retro_pabe_3014 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:144498626..144499151(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 56.91 % |
Parental protein coverage: | 65.91 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | IASDGLKGRVFEVSLAD-LQNDEVAFRKFKLITEDVQGK-NCLTNFHGMDLTRDK--MCSMVKKWQTMI- |
I..DGLK..VF.V..AD....D.VAF.KFKL..EDV..K.NCL..F...DLT..K....S..KK.QT... | |
Retrocopy | IVPDGLK*CVFQVRYAD<SKDD*VAFIKFKLLNEDVLNK<NCLIIFYDIDLTHEK*PPLSILKK*QTIL< |
Parental | EAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPD |
EA.VDVKTT..YLL.LF..GFTK..NNQI.K.SYAQH.Q..QIRKKMMEI...E.Q...LK.VVNKLI.. | |
Retrocopy | EADVDVKTTNDYLLHLFSAGFTKNCNNQI*KSSYAQHKQIHQIRKKMMEIKIQEEQASALKTVVNKLIAE |
Parental | SIGKDIEKAC-QSIYPLHDVFVRKVKMLKKPKFE-LGKLME |
S.GK...K.C.QSIY.LHDV......ML.K.KF...GK..E | |
Retrocopy | SSGKYPRKVC<QSIYSLHDVSSKIENMLRKLKFK>IGKTLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 145 .71 RPM |
SRP007412_liver | 0 .00 RPM | 124 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3675 |