Parental gene:

BT.55679, ENSBTAG00000002060

Aliases:None
Description:60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0W9]
Organism:Cow (Bos taurus)
Coordinates:19:40332946..40334703(+)


>ENSBTAG00000002060
CAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATCATCCGGAAGCCTGTGACTGTCCATTCCCGGGCTCGATGCCGGAA
AAACACCTTGGCTCGCCGGAAAGGCAGGCATATGGGTATAGGTAAGCGAAAGGGTACTGCCAATGCTCGAATGCCCGAGA
AGGTAACCTGGATGAGGAGGATGAGAATTCTGCGCCGGCTGCTTAGACGATACCGTGAATCTAAGAAGATTGACCGCCAC
ATGTATCACAGCCTGTACCTGAAGGTGAAGGGTAACGTGTTCAAAAACAAGCGGATCCTCATGGAACATATCCACAAGCT
GAAGGCAGACAAGGCTCGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCCCGCAAGC
GCCGTGAAGAGCGGCTCCAGGCCAAGAAAGAGGAAATCATCAAGACTCTGTCCAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
ERP005899_liver 151 .83 RPM
ERP005899_muscle 753 .46 RPM
SRP017611_brain 156 .63 RPM
SRP017611_kidney 272 .53 RPM
SRP017611_liver 199 .87 RPM
SRP030211_testis 98 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008520 possible_ortholog 4 retrogenes
retro_cjac_131, retro_cjac_220, retro_cjac_32, retro_cjac_64,
Microcebus murinus ENSMICG00000002663 ortholog_one2one 5 retrogenes
retro_mmur_1213, retro_mmur_231, retro_mmur_469, retro_mmur_520, retro_mmur_678,
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
retro_mmul_283, retro_mmul_63,
Nomascus leucogenys ENSNLEG00000000748 possible_ortholog 19 retrogenes
retro_nleu_1182, retro_nleu_1570, retro_nleu_1602, retro_nleu_1620, retro_nleu_1889, retro_nleu_2171, retro_nleu_2236, retro_nleu_2284, retro_nleu_2335, retro_nleu_2430, retro_nleu_2446, retro_nleu_2538, retro_nleu_2695, retro_nleu_2702, retro_nleu_2735, retro_nleu_3116, retro_nleu_479, retro_nleu_540, retro_nleu_656,
Ochotona princeps ENSOPRG00000007092 ortholog_one2one 2 retrogenes
retro_opri_1220, retro_opri_987,
Procavia capensis ENSPCAG00000015228 ortholog_one2one 1 retrogene
retro_pcap_141,
Pongo abelii ENSPPYG00000008492 possible_ortholog 20 retrogenes
retro_pabe_1546, retro_pabe_1687, retro_pabe_1709, retro_pabe_1815, retro_pabe_2177, retro_pabe_2300, retro_pabe_2320, retro_pabe_2496, retro_pabe_2625, retro_pabe_2799, retro_pabe_2800, retro_pabe_3166, retro_pabe_3278, retro_pabe_3299, retro_pabe_3513, retro_pabe_3635, retro_pabe_3829, retro_pabe_4, retro_pabe_973, retro_pabe_980,
Rattus norvegicus ENSRNOG00000004741 possible_ortholog 37 retrogenes
retro_rnor_1029, retro_rnor_1039, retro_rnor_1295, retro_rnor_1338, retro_rnor_1405, retro_rnor_1440, retro_rnor_1449, retro_rnor_1478, retro_rnor_1512, retro_rnor_1525, retro_rnor_1558, retro_rnor_1577, retro_rnor_1765, retro_rnor_1766, retro_rnor_1795, retro_rnor_1814, retro_rnor_1860, retro_rnor_1885, retro_rnor_1905, retro_rnor_1907, retro_rnor_1970, retro_rnor_1981, retro_rnor_208, retro_rnor_2169, retro_rnor_2522, retro_rnor_2536, retro_rnor_2708, retro_rnor_2773, retro_rnor_2783, retro_rnor_2921, retro_rnor_2943, retro_rnor_326, retro_rnor_426, retro_rnor_434, retro_rnor_464, retro_rnor_465, retro_rnor_829,
Tupaia belangeri ENSTBEG00000008077 ortholog_one2one 31 retrogenes
retro_tbel_1024, retro_tbel_1150, retro_tbel_1200, retro_tbel_1248, retro_tbel_1507, retro_tbel_1620, retro_tbel_173, retro_tbel_1752, retro_tbel_1791, retro_tbel_1826, retro_tbel_1942, retro_tbel_199, retro_tbel_2166, retro_tbel_2529, retro_tbel_2558, retro_tbel_2687, retro_tbel_2751, retro_tbel_2855, retro_tbel_3256, retro_tbel_3347, retro_tbel_3493, retro_tbel_3758, retro_tbel_4501, retro_tbel_4606, retro_tbel_4631, retro_tbel_759, retro_tbel_799, retro_tbel_835, retro_tbel_867, retro_tbel_957, retro_tbel_988,
Tarsius syrichta ENSTSYG00000008698 ortholog_one2one 10 retrogenes
retro_tsyr_1164, retro_tsyr_1267, retro_tsyr_1310, retro_tsyr_1330, retro_tsyr_1770, retro_tsyr_1916, retro_tsyr_540, retro_tsyr_713, retro_tsyr_782, retro_tsyr_93,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_761 79.25 67.09
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2. retro_btau_1241 76.58 70.25
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3. retro_btau_1254 63.30 67.09
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4. retro_btau_1371 86.79 100.00
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5. retro_btau_1480 86.42 51.27
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Download FASTA sequences of all ENSBTAG00000002060 retrocopies