RetrogeneDB ID: | retro_btau_1371 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:26529805..26530278(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.55679 | ||
Ensembl ID: | ENSBTAG00000002060 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0W9] |
Percent Identity: | 86.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRR |
QQI.KLIKDGLIIRKPVT.HSRA.C.KNTLA.RKGRHMGIGKRKGTAN..MPEKVT.M.RMRIL.RLLR. | |
Retrocopy | QQIQKLIKDGLIIRKPVTIHSRA*CWKNTLACRKGRHMGIGKRKGTANT*MPEKVTCMKRMRILHRLLRQ |
Parental | YRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKA-DKARKKLLADQAEARRSKTKEARKRREERL |
YRESKKID.HMYHSLYLKVKGNVFKNKR.LMEHIHKLKA.DKARKK.L..QAEA.RSKTKE.RKR.EERL | |
Retrocopy | YRESKKIDYHMYHSLYLKVKGNVFKNKRNLMEHIHKLKA<DKARKKSLVEQAEACRSKTKETRKRGEERL |
Parental | QAKKEEIIKTLSKEEETKK |
QAK.EEIIKTLSKEEETKK | |
Retrocopy | QAKEEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 151 .83 RPM |
ERP005899_muscle | 21 .38 RPM | 753 .46 RPM |
SRP017611_brain | 13 .02 RPM | 156 .63 RPM |
SRP017611_kidney | 11 .44 RPM | 272 .53 RPM |
SRP017611_liver | 17 .06 RPM | 199 .87 RPM |
SRP030211_testis | 1 .59 RPM | 98 .68 RPM |