RetrogeneDB ID: | retro_tbel_4501 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_86413:6430..6990(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 69.11 % |
Parental protein coverage: | 97.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
SMLR.QKRLASSVL.C...KVWL.PNETN....A.S..QIRKLIK.GLII.KPVT.HSR..C.KN.LAR. | |
Retrocopy | SMLRFQKRLASSVL-CYGNKVWLYPNETNEVASANSCEQIRKLIKNGLIISKPVTIHSRV*CWKNSLARW |
Parental | KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKK-IDRHMYHSLYLKVKGNVFKNKRILME |
KGRHMGIGK.KGT....MPEKV..MRR.R.L..LLR.Y.ESK..IDR.MYHSLYLK.KGN.F.NK.ILM. | |
Retrocopy | KGRHMGIGK*KGTLSDKMPEKVI*MRRTRLLSQLLRKYHESKR<IDRCMYHSLYLKLKGNIFENKWILMK |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKE |
H.HK.KADKA.KK..AD.AEA.RS.TKEARK..EER..A..EE..KTLSK. | |
Retrocopy | HTHKQKADKAHKKVPADEAEAPRSETKEARKHCEERFLA--EENFKTLSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |