RetrogeneDB ID: | retro_tbel_3493 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_142627:32757..33327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 79.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRLAS-SVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
.M.RLQKR.AS..VL.CG.KKVWLDP.ETN...NA.SRQQIRKL..DGLIIRKPVTVHS.AR.RKNTLAR | |
Retrocopy | AMSRLQKRFAS<CVLCCG-KKVWLDPKETNAIANANSRQQIRKLTEDGLIIRKPVTVHSQARRRKNTLAR |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRY-RESKKIDRHMYHSLYLKVKGNVFKNKRILM |
RKGR.MG.GKRKGT....MPEKVT.MRR.RIL.RLLR.Y..ESK..DRHMYHSLYL.VKGNVFKNKRILM | |
Retrocopy | RKGRDMGTGKRKGTTVLEMPEKVTRMRRVRIL-RLLRTY<PESK-MDRHMYHSLYLRVKGNVFKNKRILM |
Parental | EHIHKLKADKARK-KLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
EHIHKLKA.KA...KLLADQAEARRSKTKEAR.RRE..LQA.KEEIIK.LSKEEETK. | |
Retrocopy | EHIHKLKAGKAQR<KLLADQAEARRSKTKEARMRREGHLQA-KEEIIKALSKEEETKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |