RetrogeneDB ID:

retro_btau_761

Retrocopy
location
Organism:Cow (Bos taurus)
Coordinates:19:40592154..40592472(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BT.55679
Ensembl ID:ENSBTAG00000002060
Aliases:None
Description:60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0W9]


Retrocopy-Parental alignment summary:






>retro_btau_761
GAGAAGGTAACCTGGATGAGGAGGCTGAGAATTCTGTGCCGGCTTCTCAGAAGATACTGTGAGCCTAAGAAGACTGACCA
CTTCATGTATCACAGCCTATACCTTAAAGTGAAGGGTAATATGTTCAAAAACAAGCAGATTCTTGTGGAACATATCCGCA
AGCTGAAGGCAGACTAGGCTTGCAAGAAGCTTCTGGCAGACCAGGCTGAGGCCCACAGGTTGAAGACCAAGGAAGCCCAC
AAGCACCATGAAGAGCGGTTCAAGGCCAAGAAGGAGGAAATCATAAGGACTCTGTCCAAGAAGGAAGAAACCAAGAAA

ORF - retro_btau_761 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.25 %
Parental protein coverage: 67.09 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE
EKVTWMRR.RIL.RLLRRY.E.KK.D..MYHSLYLKVKGN.FKNK.IL.EHI.KLKAD.A.KKLLADQAE
RetrocopyEKVTWMRRLRILCRLLRRYCEPKKTDHFMYHSLYLKVKGNMFKNKQILVEHIRKLKAD*ACKKLLADQAE
ParentalARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
A.R.KTKEA.K..EER..AKKEEII.TLSK.EETKK
RetrocopyAHRLKTKEAHKHHEERFKAKKEEIIRTLSKKEETKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
ERP005899_liver 0 .00 RPM 151 .83 RPM
ERP005899_muscle 0 .00 RPM 753 .46 RPM
SRP017611_brain 0 .00 RPM 156 .63 RPM
SRP017611_kidney 0 .00 RPM 272 .53 RPM
SRP017611_liver 0 .00 RPM 199 .87 RPM
SRP030211_testis 0 .03 RPM 98 .68 RPM
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_761 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_761 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_btau_761 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 11 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG00000002060 5 retrocopies
Callithrix jacchus ENSCJAG000000085204 retrocopies
Microcebus murinus ENSMICG000000026635 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Ochotona princeps ENSOPRG000000070922 retrocopies
Procavia capensis ENSPCAG000000152281 retrocopy
Pongo abelii ENSPPYG0000000849220 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Tupaia belangeri ENSTBEG0000000807731 retrocopies
Tarsius syrichta ENSTSYG0000000869810 retrocopies



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