RetrogeneDB ID: | retro_tbel_173 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1367:424507..425083(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 63.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
SMLR.QKRLA...L.CGKK..W.DPNE.....N..S..QI..L.KDGLII.KPVT.HS.A.C.KNTLA.. | |
Retrocopy | SMLRVQKRLAYIILYCGKK-IWSDPNERSEIDNVNSHWQIWELFKDGLIICKPVTIHSWAQCWKNTLAHQ |
Parental | KGRHMGIGKRKGTANARMPEKVTWMRRMRI-LRRLLRRYRESKKIDRHMYHS-LY-LKVKGNVFKNKRIL |
K.R..GIG..KG..NARMPEKVTW.RR.R..L.RLLRRYRESKK.D.H..H..LY.LKVKGN.F..K..L | |
Retrocopy | KDRCVGIGR*KGAVNARMPEKVTWRRRVRT<LPRLLRRYRESKKTDHHTCHT<LY<LKVKGNAFMSKWVL |
Parental | MEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
M.HIH.LK.DK..KKLLADQAE..R.K.KEA.K..E..LQ...E.I...LSKEEET.K | |
Retrocopy | MGHIHRLKVDKVPKKLLADQAETCRFKAKEACK-CEQCLQTEREGIMGILSKEEETNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |