RetrogeneDB ID: | retro_tbel_1507 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4920:268959..269513(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 81.91 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIR-KPVTVHSRARCRKNTLARRKGRHMGIG |
ASSVL.CGKKK.WLDPNETN...NA.SRQQI.KLIKD.LII...PVTVHS.ARC.K..LA..K.RHM.I. | |
Retrocopy | ASSVLCCGKKKIWLDPNETNEIANANSRQQIQKLIKDRLIIH<QPVTVHSQARCWKKPLACWKSRHMDIS |
Parental | KRKGTANARMPEKVTWMRRMRIL-RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD |
KRKG..NARMPE.VTWMRR.RIL.RR.L.RYRESK.ID.HMYHSLYLKVKGNVFKNK.ILMEHIHKLKAD | |
Retrocopy | KRKGMVNARMPE-VTWMRRVRILQRRWLGRYRESK-IDHHMYHSLYLKVKGNVFKNKQILMEHIHKLKAD |
Parental | KARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
KA.KKLLADQAEARRSKTKEARK.REERLQAKKEEIIKTLSKE.ET.K | |
Retrocopy | KAHKKLLADQAEARRSKTKEARKCREERLQAKKEEIIKTLSKEKETEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |