RetrogeneDB ID:

retro_mmur_678

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_4608:436153..436481(+)
Located in intron of:ENSMICG00000004242
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSMICG00000002663
Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]


Retrocopy-Parental alignment summary:






>retro_mmur_678
CAGCAGATCTGGAAGCTGATCAAAGATAGGCTGATTGTCTGCAAACCTGTGACTGTCCATTCCTGGGCTAGAAGCTGGAA
AAACATCATGGCTCACTGGAAGGCAGGCATGTGGGTGTGGGTAAGCGAAAAGGTACAGCTGGTGTGCAAATGCCTGAGAA
GGTAACTGGATAAGGAAGATGAGAATTCTGTGCCAGCTGCTCAGAAGACACTGTGACTCTAAGAAGAATAACCACTACAT
GTATCACAGTCTATACCTTAAGGTGAAGGGGAATGTGTTCAAAAACAAGCAGATTCTCATGGAACATAAGCTGAAGGCAG
ACAAGGCC

ORF - retro_mmur_678 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.93 %
Parental protein coverage: 70.89 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK-GRHMGIGKRKGTANARMPEKVT-WMRRMRILRRLL
QQI.KLIKD.LI..KPVTVHS.AR..KN..A..K.GRH.G.GKRKGTA...MPEKVT.W.R.MRIL..LL
RetrocopyQQIWKLIKDRLIVCKPVTVHSWARSWKNIMAHWK<GRHVGVGKRKGTAGVQMPEKVT<WIRKMRILCQLL
ParentalRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKA
RR...SKK....MYHSLYLKVKGNVFKNK.ILME..HKLKADKA
RetrocopyRRHCDSKKNNHYMYHSLYLKVKGNVFKNKQILME--HKLKADKA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_678 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_678 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000020605 retrocopies
Callithrix jacchus ENSCJAG000000085204 retrocopies
Microcebus murinus ENSMICG00000002663 5 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Ochotona princeps ENSOPRG000000070922 retrocopies
Procavia capensis ENSPCAG000000152281 retrocopy
Pongo abelii ENSPPYG0000000849220 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Tupaia belangeri ENSTBEG0000000807731 retrocopies
Tarsius syrichta ENSTSYG0000000869810 retrocopies



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