RetrogeneDB ID: | retro_btau_1254 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:11932944..11933267(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.55679 | ||
Ensembl ID: | ENSBTAG00000002060 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0W9] |
Percent Identity: | 63.3 % |
Parental protein coverage: | 67.09 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | EKVTWMRRMRI--LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKN-KRILMEHIHKLKADKARKKLLAD |
.KVT.M.RMRI....RLLR.Y..SK..D.H.YHSLYLKVKGN.FK..K....EHIHKLK.D.A.KKL.A. | |
Retrocopy | KKVT*MKRMRIRVVHRLLRKYHKSKNNDCHIYHSLYLKVKGNLFKS<KCVFTEHIHKLKVDNACKKLQAH |
Parental | QAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
QA.A........RK..EE.LQAKKEE.IK.LSKEEETKK | |
Retrocopy | QA*AFQI*G*KSRKDFEEGLQAKKEESIKALSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 151 .83 RPM |
ERP005899_muscle | 0 .00 RPM | 753 .46 RPM |
SRP017611_brain | 0 .00 RPM | 156 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 272 .53 RPM |
SRP017611_liver | 0 .00 RPM | 199 .87 RPM |
SRP030211_testis | 0 .00 RPM | 98 .68 RPM |