RetrogeneDB ID: | retro_tbel_1620 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5268:130074..130634(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 80.95 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDP-NETNDPPNASR-QQIRKLIKDGLIIRKPVTVHSRARC-RKNTLA |
SMLRLQKRLASSV..CGKKKV.LDP.N.TN...NAS..QQI.KLIKDGLII.KPVTVHS.ARC.R.N.LA | |
Retrocopy | SMLRLQKRLASSVFHCGKKKV*LDP>NDTNKIANASSCQQIQKLIKDGLIICKPVTVHSQARC>RTNALA |
Parental | RRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILM |
R..GRHMGIGKR.GTA.AR.PE.VTWMRRMRIL..LL.RY.ESKKIDRHMYHSLYLKVK.NVFKNKRIL. | |
Retrocopy | RWQGRHMGIGKRNGTASARTPE-VTWMRRMRILHQLLIRYWESKKIDRHMYHSLYLKVKENVFKNKRILI |
Parental | EHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTL |
EHI.KLKA.KARKKLLADQAEA.RSKTKEARK...E.LQAKKEEII.TL | |
Retrocopy | EHIQKLKAGKARKKLLADQAEAHRSKTKEARKHCQENLQAKKEEIIMTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |