RetrogeneDB ID: | retro_tbel_2855 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_121168:97292..97861(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 82.72 % |
Parental protein coverage: | 96.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARC-RKNTLARRKGRHMG |
RLASSVL.CGKKKVWLDPNETN...NA.SRQQIRKLIKDGLI..KPVTVHS.A.C.RKNTLA..KGRHMG | |
Retrocopy | RLASSVLHCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLILCKPVTVHSQAQC>RKNTLALWKGRHMG |
Parental | IGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKA |
.GKRKGTANARMP.KVTW..RM.IL..LLRRYRESKKIDRHMYHSLYLKVKGNVFKNK.ILMEHIHKLKA | |
Retrocopy | MGKRKGTANARMPGKVTWRMRMSILHQLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKWILMEHIHKLKA |
Parental | DKARKKLLADQAEARRSKTKEARK-RREERLQAKKEE-IIKTLSKEEETKK |
DKARKKLL.DQAEARRS.TKEARK....E.....K.E.IIKTLSKEEETKK | |
Retrocopy | DKARKKLLVDQAEARRS*TKEARK>KCREERLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |