RetrogeneDB ID: | retro_tbel_1024 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3611:73153..73732(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 70.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLII-RKPVTVHSRARCRKNTLAR |
.MLRLQK.LASSVL.C.KKKV.LDP.ETN...NA.SRQQI......G.......VTVHSRARC.KNTLAR | |
Retrocopy | NMLRLQKGLASSVLHCDKKKVRLDPIETNEIANANSRQQIGR*SRMGSSF*SSTVTVHSRARCWKNTLAR |
Parental | R-KGRHMGIGKRKGTA-NARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRIL |
R.KG.H.G.G..KG.A..ARMP.KVTW.R..R.LRRLLRRYRESKKIDRH..HSL.LKVKGNVFKNKRIL | |
Retrocopy | R<KGSHTGTGPQKGAA<SARMPAKVTWVRE-RTLRRLLRRYRESKKIDRHTGHSLSLKVKGNVFKNKRIL |
Parental | MEHIHKLKADKARKKLLADQAEARRSKTKEARKRREER-LQAKKEEIIKTLSKEEETKK |
MEHI.KLKADKA...L.ADQAEA....T.EAR.RREER.LQAK.EEII.T.SKEEE..K | |
Retrocopy | MEHIQKLKADKAPEELRADQAEA-AGLTQEARMRREER<LQAKREEIIQTPSKEEEMEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |