RetrogeneDB ID: | retro_tbel_199 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1432:338811..339332(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 68.36 % |
Parental protein coverage: | 89.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRLASSVLRCGKK-KVWLDPNETNDPPNAS-RQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
SML..QKRLASSVL.CGKK.KVW.DPNE.N...NA...Q.I.KLIK.GLII.KP.TVHS.A.C.KN.... | |
Retrocopy | SMLKFQKRLASSVLHCGKK>KVWSDPNEINETANANFHQWIPKLIKNGLIIHKPMTVHSSAWCQKNIFIC |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILR-RLLRRYRESKKIDRHMYHSLYLKVK-GNVFKNKRIL |
.KGRHMG.G..KGTANARMPEK...MRRM.I....LL.RY.ESKKID.H.YHSLYLK.K.GNVFKNK.IL | |
Retrocopy | QKGRHMGRGE*KGTANARMPEKLSRMRRMMINA<QLLGRYCESKKIDCHVYHSLYLKAK<GNVFKNKQIL |
Parental | MEHIHKLKADKARKKLLADQAEARRSKTKEARKRREE |
..HIHKL..DKA.K.LLAD.AEA.RSK.KEA.K...E | |
Retrocopy | TGHIHKLEVDKACKRLLAD*AEAHRSKAKEAHKCGQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |