RetrogeneDB ID: | retro_tbel_3256 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_134915:74846..75287(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 74.19 % |
Parental protein coverage: | 77.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SMLRLQKRLASSVLRCGKKK-VWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR |
SMLR.QKRLASSV..CGKKK.VWLD.NETN...N..S.Q.I.KLIK..LII.KPVTVH.RARC.KNTL.. | |
Retrocopy | SMLRFQKRLASSVFCCGKKK<VWLDTNETNEMANDNSCQKIQKLIKGELIICKPVTVHFRARCQKNTLTC |
Parental | RKGRHMGIGKRK-GTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKR-IL |
.KGRHMGIGKRK.GTANAR.PE.VTWM.RMRIL..LLRRY.E.KKID.H.YHSLYL..KGNVFK.K...L | |
Retrocopy | QKGRHMGIGKRK<GTANARTPE-VTWM-RMRILQWLLRRYQETKKIDYHVYHSLYL--KGNVFKKKQ<VL |
Parental | MEHIHKLKADKARKK |
MEHI..LKADKA.KK | |
Retrocopy | MEHIQNLKADKACKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |