RetrogeneDB ID: | retro_tbel_2166 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_103162:493..1052(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 75.66 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNT-LAR |
SMLR.QKRLAS.VLRC.KKKV.L.P.ETN...NA.SR.QIRKL.KD.LIIRK.VTVH.RA.C.KNT.L.R | |
Retrocopy | SMLRIQKRLASRVLRCSKKKVCLFPDETNEIANANSRHQIRKLFKDRLIIRKLVTVHTRAQCWKNT<LGR |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILME |
RKG.H.GIG..KGT.NARMPEKVTWMRRMRIL.RLLRR.RESKKIDR..YHSLYLKVKGN.FKNK.ILME | |
Retrocopy | RKGKHVGIGE*KGTTNARMPEKVTWMRRMRILHRLLRR*RESKKIDRRLYHSLYLKVKGNEFKNKQILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQ-AKKEEIIKTL |
H.HKLKAD.A.KKLLA.QAEA..SKTKE..K..EE.L..AKKE..IKT. | |
Retrocopy | HTHKLKADNASKKLLAGQAEACKSKTKETPKHHEEWLR<AKKEVFIKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |