RetrogeneDB ID:

retro_tsyr_93

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_2672:210436..210904(-)
Located in intron of:ENSTSYG00000010370
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSTSYG00000008698
Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]


Retrocopy-Parental alignment summary:






>retro_tsyr_93
CAGCAGATCTGGAAACTGATCAAAGATGGACTGATCATCTGCAAGCCAGTGACTGTCCATTCCCAGGCTTGATGGCAGAA
GAACACGTTGGCCCTCCAGAAGGGCAGGTACATGGGCATAGGTAAGCGAAAGGGGACAGCCAATGTGTGGATGCACGAGA
AGGTGACCTTGATGAAGATGGGGATCCAGTGCCATCTGCTCAGGGGATGCCATGAATCGACGATCGACCGCCACATGTAT
CACAGCCTGTACCTGAAGGTGATGGGGAACGTGTTTAAGAACAAGCGGATCCTCGTGGAACACATCCACAAGCTGACGGC
AGACTAGACCTACAAGAAGCTCCTGGTGGACCATGCCGAGGCCCGCAGGTCTAAGACCAAGGAAGCGCACAAGTGCTGTG
AAGAGTGCCTGCAGGCCAAGAAGGAGGAGATCATCAAGACTCTGTTCAAGGAGGAAGAGACCAGGAAA

ORF - retro_tsyr_93 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.15 %
Parental protein coverage: 80.41 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRR
QQI.KLIKDGLII.KPVTVHS.A...KNTLA..KGR.MGIGKRKGTAN..M.EKVT.M..M.I...LLR.
RetrocopyQQIWKLIKDGLIICKPVTVHSQA*WQKNTLALQKGRYMGIGKRKGTANVWMHEKVTLMK-MGIQCHLLRG
ParentalYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARRRREERLQ
..ES..IDRHMYHSLYLKV.GNVFKNKRIL.EHIHKL.AD...KKLL.D.AEARRSKTKEA....EE.LQ
RetrocopyCHEST-IDRHMYHSLYLKVMGNVFKNKRILVEHIHKLTAD*TYKKLLVDHAEARRSKTKEAHKCCEECLQ
ParentalAQKEQ--KTLSKEAETKK
A.KE...KTL.KE.ET.K
RetrocopyAKKEEIIKTLFKEEETRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_93 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000020605 retrocopies
Callithrix jacchus ENSCJAG000000085204 retrocopies
Microcebus murinus ENSMICG000000026635 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Ochotona princeps ENSOPRG000000070922 retrocopies
Procavia capensis ENSPCAG000000152281 retrocopy
Pongo abelii ENSPPYG0000000849220 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Tupaia belangeri ENSTBEG0000000807731 retrocopies
Tarsius syrichta ENSTSYG00000008698 10 retrocopies



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