RetrogeneDB ID: | retro_tsyr_713 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_178564:3537..3923(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000003960 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTSYG00000008698 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 61.83 % |
Parental protein coverage: | 67.01 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | QIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRY |
Q..KLIKD.LII.......S.ARC.KNTL...KG.HM..GK.KGTAN..MP.KVT.M.RMRIL..LLRRY | |
Retrocopy | QTQKLIKDKLIIPN-L*LPSWARCKKNTLFC*KGAHMDMGK*KGTANT*MPKKVTRMKRMRILYQLLRRY |
Parental | RESKKIDRHMYHSLYLKVKGNVFKNKRILME-HIHKLKADKARKKLLADQAEARRSKTKEA |
.....I..H.YHSLYLKVK.NVFKNK.ILM...IH.LK..KA.KKLL...AEA.R.K..EA | |
Retrocopy | HVPRRIHHHTYHSLYLKVKENVFKNK*ILMD<PIHRLKTGKAGKKLLTSHAEACRPKYMEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |