RetrogeneDB ID: | retro_btau_1241 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:106481962..106482295(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.55679 | ||
Ensembl ID: | ENSBTAG00000002060 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0W9] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 70.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLL |
NA.MPEK.TWMRRM.IL..LL..Y.ESKKI..H.YHSLYLKVK.NVF.NK.I.MEHIHKLKADK..KKLL | |
Retrocopy | NAQMPEKLTWMRRMIILCQLLS*YHESKKINHHIYHSLYLKVKDNVFINKQIPMEHIHKLKADKTQKKLL |
Parental | ADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
..QAEA.RSKTKEARK..EE.LQ.KKEE.IKTLSK.EETKK | |
Retrocopy | VNQAEACRSKTKEARKHHEEHLQTKKEEVIKTLSKKEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 151 .83 RPM |
ERP005899_muscle | 0 .00 RPM | 753 .46 RPM |
SRP017611_brain | 0 .18 RPM | 156 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 272 .53 RPM |
SRP017611_liver | 0 .00 RPM | 199 .87 RPM |
SRP030211_testis | 0 .17 RPM | 98 .68 RPM |