RetrogeneDB ID: | retro_tbel_957 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_343:119192..119783(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSTBEG00000008077 | ||
Aliases: | None | ||
Description: | ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] |
Percent Identity: | 79.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNDPPNA-SRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
SMLRLQKRLASS.L.CGKKKVWL.PNET.......SRQQI.KLIKDGLII.KPVTVHS.A.C.K.TLAR. | |
Retrocopy | SMLRLQKRLASSILHCGKKKVWLNPNETRNCQSQ>SRQQIWKLIKDGLIICKPVTVHSQA*CQKVTLARQ |
Parental | KGRHM-GIGKRKGTA---NARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRI |
KGRHM.G.G..KG.....NA.MPEKVTWM.RMRILR.LLR.Y.ES.KIDRHMYHSLYLKVKGNVFKNKRI | |
Retrocopy | KGRHM<GHG*AKGYGQC*NAGMPEKVTWMSRMRILRWLLR*YWESEKIDRHMYHSLYLKVKGNVFKNKRI |
Parental | LMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
LMEHIHKLKADKA.KKLLA.QAEAR.SK.KEA.K..EERLQA.KEEIIKTLSKEEETKK | |
Retrocopy | LMEHIHKLKADKACKKLLAGQAEARSSKIKEACKCCEERLQARKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |