RetrogeneDB ID: | retro_hsap_2348 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:177065638..177065980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218175 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSG00000137818 | ||
Aliases: | RPLP1, LP1, P1, RPP1 | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MASVS.LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA..... | |
Retrocopy | MASVSKLACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAXXXXX |
Parental | AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD |
...........PSTAAAPAEEKKVEAKKEES.ESDDDMG.GLFD | |
Retrocopy | XXXXXXXXXXXPSTAAAPAEEKKVEAKKEESKESDDDMGLGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .66 RPM | 427 .30 RPM |
bodymap2_adrenal | 1 .64 RPM | 725 .01 RPM |
bodymap2_brain | 0 .16 RPM | 87 .55 RPM |
bodymap2_breast | 0 .41 RPM | 301 .89 RPM |
bodymap2_colon | 0 .70 RPM | 579 .73 RPM |
bodymap2_heart | 0 .22 RPM | 216 .12 RPM |
bodymap2_kidney | 0 .23 RPM | 277 .51 RPM |
bodymap2_liver | 0 .28 RPM | 291 .89 RPM |
bodymap2_lung | 0 .84 RPM | 786 .06 RPM |
bodymap2_lymph_node | 0 .42 RPM | 987 .56 RPM |
bodymap2_ovary | 1 .10 RPM | 567 .51 RPM |
bodymap2_prostate | 0 .55 RPM | 839 .59 RPM |
bodymap2_skeletal_muscle | 2 .71 RPM | 1616 .35 RPM |
bodymap2_testis | 0 .43 RPM | 367 .99 RPM |
bodymap2_thyroid | 0 .53 RPM | 263 .03 RPM |
bodymap2_white_blood_cells | 0 .55 RPM | 956 .87 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_115141 | 806 libraries | 765 libraries | 247 libraries | 9 libraries | 2 libraries |
TSS #2 | TSS_115142 | 294 libraries | 499 libraries | 956 libraries | 71 libraries | 9 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_160 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .80 RPM |
CEU_NA11843 | 2 .59 RPM |
CEU_NA11930 | 1 .86 RPM |
CEU_NA12004 | 1 .44 RPM |
CEU_NA12400 | 3 .23 RPM |
CEU_NA12751 | 1 .80 RPM |
CEU_NA12760 | 4 .63 RPM |
CEU_NA12827 | 2 .26 RPM |
CEU_NA12872 | 2 .07 RPM |
CEU_NA12873 | 2 .74 RPM |
FIN_HG00183 | 1 .78 RPM |
FIN_HG00277 | 2 .33 RPM |
FIN_HG00315 | 2 .18 RPM |
FIN_HG00321 | 1 .63 RPM |
FIN_HG00328 | 2 .11 RPM |
FIN_HG00338 | 2 .09 RPM |
FIN_HG00349 | 3 .44 RPM |
FIN_HG00375 | 1 .96 RPM |
FIN_HG00377 | 2 .87 RPM |
FIN_HG00378 | 1 .40 RPM |
GBR_HG00099 | 2 .06 RPM |
GBR_HG00111 | 2 .17 RPM |
GBR_HG00114 | 1 .68 RPM |
GBR_HG00119 | 1 .25 RPM |
GBR_HG00131 | 1 .03 RPM |
GBR_HG00133 | 2 .05 RPM |
GBR_HG00134 | 1 .77 RPM |
GBR_HG00137 | 2 .50 RPM |
GBR_HG00142 | 1 .39 RPM |
GBR_HG00143 | 1 .75 RPM |
TSI_NA20512 | 1 .98 RPM |
TSI_NA20513 | 0 .87 RPM |
TSI_NA20518 | 2 .22 RPM |
TSI_NA20532 | 1 .39 RPM |
TSI_NA20538 | 2 .30 RPM |
TSI_NA20756 | 2 .04 RPM |
TSI_NA20765 | 1 .33 RPM |
TSI_NA20771 | 3 .12 RPM |
TSI_NA20786 | 1 .83 RPM |
TSI_NA20798 | 1 .53 RPM |
YRI_NA18870 | 2 .84 RPM |
YRI_NA18907 | 1 .63 RPM |
YRI_NA18916 | 1 .26 RPM |
YRI_NA19093 | 0 .96 RPM |
YRI_NA19099 | 1 .81 RPM |
YRI_NA19114 | 1 .60 RPM |
YRI_NA19118 | 1 .24 RPM |
YRI_NA19213 | 1 .43 RPM |
YRI_NA19214 | 1 .03 RPM |
YRI_NA19223 | 0 .99 RPM |