RetrogeneDB ID: | retro_mmus_2180 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:91039575..91039875(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp1 | ||
Ensembl ID: | ENSMUSG00000007892 | ||
Aliases: | Rplp1, 2410042H16Rik, Arpp1, C430017H15Rik | ||
Description: | ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099] |
Percent Identity: | 62. % |
Parental protein coverage: | 87.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGG |
IY..LILHD.EV.V..D.INALIK.A...VE.FWPGLF.KALAN..I...IC..GAG.P..AAGA.PAG. | |
Retrocopy | IYFVLILHDQEVKVMKDEINALIKDADFNVESFWPGLFPKALANIKIERFICHLGAGAPGSAAGAMPAGS |
Parental | AAPSTAAAPAEEKKVEAKKEESEESEDDMG |
...ST...P.EE.KVEAK.EE..ES.DD.G | |
Retrocopy | PDSSTTNVPVEERKVEAKNEEPKESVDDIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 145 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 79 .07 RPM |
SRP007412_heart | 0 .00 RPM | 153 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 121 .10 RPM |
SRP007412_liver | 0 .00 RPM | 120 .18 RPM |
SRP007412_testis | 0 .00 RPM | 71 .95 RPM |