RetrogeneDB ID: | retro_ecab_820 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:86214808..86215126(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000008542 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.49 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VSELACIYSALILHDDKVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVSIGSLI-CNVGAGGPPPPA |
VSEL..IY.AL.L..D..T.TEDKINAL.K.AGV.V.PF.PGLFAKALA.V..GSL..C....G..P.P. | |
Retrocopy | VSELR*IYLALSLQGDELTLTEDKINALVKVAGVDVQPF*PGLFAKALAKVHNGSLT<CSRSCG--PAPL |
Parental | GAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMG-FGLFD |
G....GGPA.S..AAP..EKKVEAKKEESE.SDDDMG.F.LFD | |
Retrocopy | GVW-NGGPASSSTAAP--EKKVEAKKEESEGSDDDMG>FSLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 1194 .06 RPM |
SRP021940_cerebellum | 0 .00 RPM | 285 .63 RPM |
SRP021940_embryo | 0 .05 RPM | 402 .34 RPM |
SRP021940_placental_villous | 0 .00 RPM | 458 .64 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 701 .46 RPM |
SRP021940_testis | 0 .06 RPM | 448 .31 RPM |