RetrogeneDB ID: | retro_rnor_1042 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:37852589..37852773(-) | ||
Located in intron of: | ENSRNOG00000025925 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSRNOG00000011955 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 57.58 % |
Parental protein coverage: | 57.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFW-PGLFAKALANVNIGSLICNVGAG |
ASVS.L......L.L....VT..EDK..A.I.AA.VN..P.W.PGLFAKAL..VNIG.LI..VGAG | |
Retrocopy | ASVSKL----TLLLLAWS*VTRAEDKTIAVIRAADVNTKPLW>PGLFAKALSSVNIGTLIYDVGAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .47 RPM |