RetrogeneDB ID: | retro_itri_1842 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394014.1:66456..66787(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 57.89 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIK-AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPA |
MAS.SE...IYS..IL.D.EVT...D.IN.LI..AA..NVEPF.P..FAKALANVNIGS....VG.GGPA | |
Retrocopy | MASFSEITFIYSVPILYDNEVTLKKDNINDLIM<AAVANVEPFRPTSFAKALANVNIGSFLYSVGVGGPA |
Parental | PAAGAAPAGGPAPSTAAAP-AEEKKVEAKKEESEESDDDMGFGL |
P..GA....G.APSTA....AE.K.....K..SEES.DDMG... | |
Retrocopy | PKPGATLVIGTAPSTASIE<AEKKHMQ-RKTKSEESNDDMGLDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |