RetrogeneDB ID: | retro_itri_1698 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393642.1:260740..260966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 64.47 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVN-IGSLICNVGAGGPAPAAGAAP |
A.IY.ALILH.D.VTVTEDK.N.L....GVNVE.FWPGL.AKALANV....S.IC.V.AG..A.AAGA.. | |
Retrocopy | AGIYYALILHEDKVTVTEDKVNTLVEEGGVNVESFWPGLSAKALANVH>LKSCICIVRAGEGAAAAGAVS |
Parental | AGGPAP |
A..P.P | |
Retrocopy | ARDPSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |