RetrogeneDB ID: | retro_pabe_261 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:79252020..79252353(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSPPYG00000006601 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 53.57 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MAS.S.LACIY...IL..DEVTV.EDKIN.LIKAAGVN...F.P.LFAKAL.NV.I..L.C..G..G... | |
Retrocopy | MASISQLACIYLVFILCEDEVTVREDKINDLIKAAGVNIKLF*PDLFAKALVNVCIRILVCTEGVSGXXX |
Parental | AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL |
...........PST..A...E.K.EA...ESEE...D..FGL | |
Retrocopy | XXXXXXXXXXXPSTTTASTKENKAEA-N*ESEEYVEDKSFGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 56 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .56 RPM |
SRP007412_heart | 0 .00 RPM | 134 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 166 .40 RPM |
SRP007412_liver | 0 .00 RPM | 207 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_472 |
Gorilla gorilla | retro_ggor_94 |