Parental gene:

RPLP1, ENSCJAG00000032919

Aliases:None
Description:ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:11889461..11891995(+)


>ENSCJAG00000032919
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACCGTCACGGAGGATAA
GATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAACCTTTCTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACG
TCAACATTGGGAGCCTCATCTGCAATGTAGGGGCTGGTGGGCCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT
GCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAATCTGATGATGA
CATGGGCTTTGGTCTTTTTGACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 171 .41 RPM
SRP051959_skeletal_muscle 176 .65 RPM
SRP051959_lymph_node 168 .97 RPM
SRP051959_lung 121 .91 RPM
SRP051959_liver 96 .48 RPM
SRP051959_kidney 120 .09 RPM
SRP051959_heart 102 .58 RPM
SRP051959_colon 107 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018320 ortholog_one2one 4 retrogenes
retro_btau_1131, retro_btau_1717, retro_btau_186, retro_btau_615,
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
retro_ecab_380, retro_ecab_677, retro_ecab_820, retro_ecab_958,
Homo sapiens ENSG00000137818 ortholog_one2one 18 retrogenes
retro_hsap_1325, retro_hsap_1366, retro_hsap_1719, retro_hsap_1835, retro_hsap_2014, retro_hsap_2079, retro_hsap_2348, retro_hsap_2897, retro_hsap_2936, retro_hsap_3169, retro_hsap_3382, retro_hsap_3392, retro_hsap_3523, retro_hsap_3768, retro_hsap_3939, retro_hsap_472, retro_hsap_533, retro_hsap_679,
Gorilla gorilla ENSGGOG00000003980 ortholog_one2many 13 retrogenes
retro_ggor_1033, retro_ggor_118, retro_ggor_1276, retro_ggor_1458, retro_ggor_1628, retro_ggor_2036, retro_ggor_2163, retro_ggor_2269, retro_ggor_2381, retro_ggor_2534, retro_ggor_585, retro_ggor_73, retro_ggor_94,
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
retro_mluc_10, retro_mluc_1064, retro_mluc_1122, retro_mluc_1234, retro_mluc_136, retro_mluc_1374, retro_mluc_1412, retro_mluc_1424, retro_mluc_1654, retro_mluc_1670, retro_mluc_1751, retro_mluc_1810, retro_mluc_1832, retro_mluc_1850, retro_mluc_1944, retro_mluc_197, retro_mluc_2025, retro_mluc_2255, retro_mluc_2265, retro_mluc_2294, retro_mluc_2489, retro_mluc_2578, retro_mluc_433, retro_mluc_472, retro_mluc_570, retro_mluc_577, retro_mluc_61, retro_mluc_732, retro_mluc_791, retro_mluc_858, retro_mluc_916, retro_mluc_945, retro_mluc_95,
Macaca mulatta ENSMMUG00000014888 ortholog_one2many 7 retrogenes
retro_mmul_111, retro_mmul_2194, retro_mmul_2282, retro_mmul_257, retro_mmul_260, retro_mmul_461, retro_mmul_60,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Mustela putorius furo ENSMPUG00000000204 ortholog_one2one 13 retrogenes
retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
retro_mmus_180, retro_mmus_206, retro_mmus_2060, retro_mmus_2180, retro_mmus_247, retro_mmus_2525,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Otolemur garnettii ENSOGAG00000029641 ortholog_one2one 19 retrogenes
retro_ogar_1078, retro_ogar_1259, retro_ogar_1363, retro_ogar_1430, retro_ogar_1670, retro_ogar_2215, retro_ogar_2413, retro_ogar_2603, retro_ogar_2683, retro_ogar_2942, retro_ogar_3053, retro_ogar_3222, retro_ogar_3393, retro_ogar_363, retro_ogar_474, retro_ogar_500, retro_ogar_574, retro_ogar_607, retro_ogar_961,
Ochotona princeps ENSOPRG00000001163 possible_ortholog 11 retrogenes
retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Procavia capensis ENSPCAG00000014595 ortholog_one2one 7 retrogenes
retro_pcap_107, retro_pcap_118, retro_pcap_124, retro_pcap_315, retro_pcap_32, retro_pcap_36, retro_pcap_83,
Pongo abelii ENSPPYG00000006601 ortholog_one2one 5 retrogenes
retro_pabe_1506, retro_pabe_160, retro_pabe_182, retro_pabe_261, retro_pabe_3080,
Pan troglodytes ENSPTRG00000007228 ortholog_one2many 1 retrogene
retro_ptro_96,
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
retro_rnor_1042, retro_rnor_1402, retro_rnor_1827, retro_rnor_2175, retro_rnor_2678, retro_rnor_493,
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
retro_rnor_2432, retro_rnor_2700, retro_rnor_2934,
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Ictidomys tridecemlineatus ENSSTOG00000027893 ortholog_one2one 8 retrogenes
retro_itri_1589, retro_itri_1698, retro_itri_1842, retro_itri_1856, retro_itri_226, retro_itri_409, retro_itri_796, retro_itri_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_183 88.16 65.79
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2. retro_cjac_267 94.74 100.00
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3. retro_cjac_306 93.86 100.00
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4. retro_cjac_458 96.49 100.00
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5. retro_cjac_469 61.05 82.46
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6. retro_cjac_694 63.96 95.61
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7. retro_cjac_750 90.35 100.00
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8. retro_cjac_984 70.00 95.61
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9. retro_cjac_1125 64.06 56.14
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10. retro_cjac_1150 77.39 100.00
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11. retro_cjac_1222 87.83 100.00
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12. retro_cjac_1375 64.71 58.77
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13. retro_cjac_1413 89.09 96.49
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14. retro_cjac_1666 88.70 100.00
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15. retro_cjac_1809 67.23 100.00
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16. retro_cjac_2090 85.96 100.00
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17. retro_cjac_2626 76.07 100.00
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18. retro_cjac_2765 91.30 100.00
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19. retro_cjac_3131 88.60 100.00
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Download FASTA sequences of all ENSCJAG00000032919 retrocopies