RetrogeneDB - Parental gene ENSCJAG00000032919 details

                            
>ENSCJAG00000032919
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACCGTCACGGAGGATAA

GATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAACCTTTCTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACG

TCAACATTGGGAGCCTCATCTGCAATGTAGGGGCTGGTGGGCCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT

GCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAATCTGATGATGA

CATGGGCTTTGGTCTTTTTGACTAA

Library	Parental gene expression (RPM)
SRP051959_colon	107 .48 RPM
SRP051959_heart	102 .58 RPM
SRP051959_kidney	120 .09 RPM
SRP051959_liver	96 .48 RPM
SRP051959_lung	121 .91 RPM
SRP051959_lymph_node	168 .97 RPM
SRP051959_skeletal_muscle	176 .65 RPM
SRP051959_spleen	171 .41 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000018320	ortholog_one2one	4 retrogenes	retro_btau_1131, retro_btau_1717, retro_btau_186, retro_btau_615,
Equus caballus	ENSECAG00000008542	possible_ortholog	4 retrogenes	retro_ecab_380, retro_ecab_677, retro_ecab_820, retro_ecab_958,
Homo sapiens	ENSG00000137818	ortholog_one2one	18 retrogenes	retro_hsap_1325, retro_hsap_1366, retro_hsap_1719, retro_hsap_1835, retro_hsap_2014, retro_hsap_2079, retro_hsap_2348, retro_hsap_2897, retro_hsap_2936, retro_hsap_3169, retro_hsap_3382, retro_hsap_3392, retro_hsap_3523, retro_hsap_3768, retro_hsap_3939, retro_hsap_472, retro_hsap_533, retro_hsap_679,
Gorilla gorilla	ENSGGOG00000003980	ortholog_one2many	13 retrogenes	retro_ggor_1033, retro_ggor_118, retro_ggor_1276, retro_ggor_1458, retro_ggor_1628, retro_ggor_2036, retro_ggor_2163, retro_ggor_2269, retro_ggor_2381, retro_ggor_2534, retro_ggor_585, retro_ggor_73, retro_ggor_94,
Latimeria chalumnae	ENSLACG00000012630	ortholog_many2many	1 retrogene	retro_lcha_7,
Macropus eugenii	ENSMEUG00000015277	possible_ortholog	6 retrogenes	retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Myotis lucifugus	ENSMLUG00000010542	possible_ortholog	33 retrogenes	retro_mluc_10, retro_mluc_1064, retro_mluc_1122, retro_mluc_1234, retro_mluc_136, retro_mluc_1374, retro_mluc_1412, retro_mluc_1424, retro_mluc_1654, retro_mluc_1670, retro_mluc_1751, retro_mluc_1810, retro_mluc_1832, retro_mluc_1850, retro_mluc_1944, retro_mluc_197, retro_mluc_2025, retro_mluc_2255, retro_mluc_2265, retro_mluc_2294, retro_mluc_2489, retro_mluc_2578, retro_mluc_433, retro_mluc_472, retro_mluc_570, retro_mluc_577, retro_mluc_61, retro_mluc_732, retro_mluc_791, retro_mluc_858, retro_mluc_916, retro_mluc_945, retro_mluc_95,
Macaca mulatta	ENSMMUG00000014888	ortholog_one2many	7 retrogenes	retro_mmul_111, retro_mmul_2194, retro_mmul_2282, retro_mmul_257, retro_mmul_260, retro_mmul_461, retro_mmul_60,
Monodelphis domestica	ENSMODG00000009209	possible_ortholog	1 retrogene	retro_mdom_1022,
Mustela putorius furo	ENSMPUG00000000204	ortholog_one2one	13 retrogenes	retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mus musculus	ENSMUSG00000007892	possible_ortholog	6 retrogenes	retro_mmus_180, retro_mmus_206, retro_mmus_2060, retro_mmus_2180, retro_mmus_247, retro_mmus_2525,
Oryctolagus cuniculus	ENSOCUG00000015087	possible_ortholog	8 retrogenes	retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Otolemur garnettii	ENSOGAG00000029641	ortholog_one2one	19 retrogenes	retro_ogar_1078, retro_ogar_1259, retro_ogar_1363, retro_ogar_1430, retro_ogar_1670, retro_ogar_2215, retro_ogar_2413, retro_ogar_2603, retro_ogar_2683, retro_ogar_2942, retro_ogar_3053, retro_ogar_3222, retro_ogar_3393, retro_ogar_363, retro_ogar_474, retro_ogar_500, retro_ogar_574, retro_ogar_607, retro_ogar_961,
Ochotona princeps	ENSOPRG00000001163	possible_ortholog	11 retrogenes	retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Procavia capensis	ENSPCAG00000014595	ortholog_one2one	7 retrogenes	retro_pcap_107, retro_pcap_118, retro_pcap_124, retro_pcap_315, retro_pcap_32, retro_pcap_36, retro_pcap_83,
Pongo abelii	ENSPPYG00000006601	ortholog_one2one	5 retrogenes	retro_pabe_1506, retro_pabe_160, retro_pabe_182, retro_pabe_261, retro_pabe_3080,
Pan troglodytes	ENSPTRG00000007228	ortholog_one2many	1 retrogene	retro_ptro_96,
Rattus norvegicus	ENSRNOG00000011955	possible_ortholog	6 retrogenes	retro_rnor_1042, retro_rnor_1402, retro_rnor_1827, retro_rnor_2175, retro_rnor_2678, retro_rnor_493,
Rattus norvegicus	ENSRNOG00000013874	possible_ortholog	3 retrogenes	retro_rnor_2432, retro_rnor_2700, retro_rnor_2934,
Sarcophilus harrisii	ENSSHAG00000014818	possible_ortholog	6 retrogenes	retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Ictidomys tridecemlineatus	ENSSTOG00000027893	ortholog_one2one	8 retrogenes	retro_itri_1589, retro_itri_1698, retro_itri_1842, retro_itri_1856, retro_itri_226, retro_itri_409, retro_itri_796, retro_itri_976,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_183	88.16	65.79	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_267	94.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_306	93.86	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_458	96.49	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_469	61.05	82.46	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_694	63.96	95.61	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_750	90.35	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_984	70.00	95.61	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_1125	64.06	56.14	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_1150	77.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_1222	87.83	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_1375	64.71	58.77	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_1413	89.09	96.49	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_1666	88.70	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_1809	67.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_2090	85.96	100.00	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cjac_2626	76.07	100.00	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cjac_2765	91.30	100.00	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_cjac_3131	88.60	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000032919 retrocopies

Parental gene:	RPLP1, ENSCJAG00000032919
Aliases:	None
Description:	ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	10:11889461..11891995(+)

Parental gene:

RPLP1, ENSCJAG00000032919