RetrogeneDB ID: | retro_pabe_1506 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:46803955..46804195(-) | ||
Located in intron of: | ENSPPYG00000008384 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSPPYG00000006601 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 68.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | VNVEPFWPGL-FAKALA-NVNI-GSLICN-VGAGGPA-PAAGAAPAGGPAPST-AAAPAEEKKVEAKKEE |
VNVEPFWPGL.FAKALA.NVNI.G...C..VGA.GPA.PAA.AAPAGGPAPST.AAAPAEEKKVEAKKEE | |
Retrocopy | VNVEPFWPGL>FAKALA>NVNI>GASACS>VGADGPA>PAARAAPAGGPAPST>AAAPAEEKKVEAKKEE |
Parental | SEESDDDMGFGLFD |
SEESDDDMGFGLFD | |
Retrocopy | SEESDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 56 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .56 RPM |
SRP007412_heart | 0 .03 RPM | 134 .65 RPM |
SRP007412_kidney | 0 .03 RPM | 166 .40 RPM |
SRP007412_liver | 0 .03 RPM | 207 .42 RPM |