RetrogeneDB ID: | retro_pabe_3080 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:101957978..101958266(+) | ||
Located in intron of: | ENSPPYG00000017889 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSPPYG00000006601 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 73. % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ELACIYSALILHDD-EVTVTEDK-INALIKAAGVNVEPFWPGLFAKALANVNIGSLIC-NVGAGGPAPAA |
E.ACIYS.LILH...EVTVTEDK.I.ALIK..GVNVEPF.PGL.AKALA.V.I..LI..NVG.GGPAPAA | |
Retrocopy | EFACIYSTLILHYE>EVTVTEDK<IKALIKVSGVNVEPFQPGLLAKALAYVDIERLIL<NVGVGGPAPAA |
Parental | GAA-PAGGPAPSTAAAPAEEKKVEAKKEES |
.AA....GPA.S.AAAPAEEKKV.AKK.ES | |
Retrocopy | AAA>STVGPALSRAAAPAEEKKV*AKKKES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 56 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .56 RPM |
SRP007412_heart | 0 .00 RPM | 134 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 166 .40 RPM |
SRP007412_liver | 0 .00 RPM | 207 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3768 |
Gorilla gorilla | retro_ggor_2534 |