RetrogeneDB ID: | retro_rnor_2175 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:140334366..140334667(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSRNOG00000011955 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 51.33 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | LACIYSA-LILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKA-LANVNI-GSLICNVGAGGPAPAAG |
.AC.YS..LIL..D.VT.TE.K..ALIKAAG.....FW..L.AK...A.VN..GSL..N..A...APAAG | |
Retrocopy | IACTYSP>LILGSDWVTFTEGKASALIKAAGA----FWACLSAKPHPASVNL<GSLMAN-QALTSAPAAG |
Parental | AAPAGG-PAPSAAA-APAEEKKVEAKKEESEESEDDMGFGLFD |
...A.G.P.P...A..PAE..K.....EESE.S.D..GFGL.D | |
Retrocopy | VTKADG<PCPVPTA<CPAEKQK---QREESEQSHDTTGFGLPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .47 RPM |